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Updated GISAID data early-mid January has FluQE31 KP.3.1.1 / MC and children down to under a third of all sequences.
FLiRT KS.1.1 / FLuQE KP.3.3 hybrid XEC now over two fifths.
JN.1 FLiRT descendant LF.7 is diversifying, while LP.8.1.1 / NY, MC.8.1, and XEQ (recombinant of FLiRT KS.1.1.2 and KP.3) all stand out.
❖ #ThisIsOurPolio #Covid #Covid19 #SARS2 #variants #CovidIsNotOver #CovidIsAirborne
![Chart: SARSCoV2 Variant Dashboard - USA | 30-DAY TRENDS
Source: NYITCOM Research Report (Raj Rajnarayanan)
Caption (in part): Circulating Variants in…following US States: All - Specimen Collected in…last 30 days | Updated on 1/31/2025 6:43:47 AM [GMT?] | Source (sequences): GISAID
Packed-bubble chart showing tallies of each identified variant for each state, for collection dates 1/5/2025 to 1/18/2025. Top subvariants: XEC (26.32%), KP.3.1.1 (8.61%), LP.8.1 (5.74%), XEC.2 (4.23%), MC.10.1 (4.18%).
Raj has standardized bubbles to violet (BA.2.86.*), aqua green (XBB.1.16.*), forest green (XEC, a recombinant of two B.2.86 strains), and yellow (LP.8.*). although some newer Pango aliases may still be getting unique colors assigned by Tableau.
Bubbles largest and most prominent for: XEC (forest) in Ohio (171), New York (85), Colorado (58), Minnesota (46), New Jersey, Iowa, Utah; KP.3.1.1 (violet) for Ohio (58), Minnesota, New York; MC.8.1 (violet) for Ohio (51); XEQ (aqua) for Colorado (34); LP.8.1 (yellow) for New York, Ohio.
Many dozens of bubbles of varying sizes representing over a hundred variants across various states.
ALT-text by beadsland at ko-fi.](https://spaces.hcommons.social/media_attachments/files/113/925/598/052/682/439/original/4b72cd6231c464fe.png "Chart: SARSCoV2 Variant Dashboard - USA | 30-DAY TRENDS
Source: NYITCOM Research Report (Raj Rajnarayanan)
Caption (in part): Circulating Variants in…following US States: All - Specimen Collected in…last 30 days | Updated on 1/31/2025 6:43:47 AM [GMT?] | Source (sequences): GISAID
Packed-bubble chart showing tallies of each identified variant for each state, for collection dates 1/5/2025 to 1/18/2025. Top subvariants: XEC (26.32%), KP.3.1.1 (8.61%), LP.8.1 (5.74%), XEC.2 (4.23%), MC.10.1 (4.18%).
Raj has standardized bubbles to violet (BA.2.86.*), aqua green (XBB.1.16.*), forest green (XEC, a recombinant of two B.2.86 strains), and yellow (LP.8.*). although some newer Pango aliases may still be getting unique colors assigned by Tableau.
Bubbles largest and most prominent for: XEC (forest) in Ohio (171), New York (85), Colorado (58), Minnesota (46), New Jersey, Iowa, Utah; KP.3.1.1 (violet) for Ohio (58), Minnesota, New York; MC.8.1 (violet) for Ohio (51); XEQ (aqua) for Colorado (34); LP.8.1 (yellow) for New York, Ohio.
Many dozens of bubbles of varying sizes representing over a hundred variants across various states.
ALT-text by beadsland at ko-fi.")
ALT
![Chart: Variants by Pango-Designated Lineage: U.S. Jan 5 to 18
Source: GISAID (via Raj Rajnarayanan's COVID-19 Variant Dashboard, updated Jan 31)
[ beadsland on Ko-fi ]
Pie chart of major lineages, with lesser lineages bundled together by common alphanumeric initial character. Call-outs for each pie slice list number of variants counted and provide a percentage of pie.
Percentage is in a dull grey font, to which a dark backing has been applied to aid legibility.
Color key of pie slices aligns to that of latest "Estimated Variant Proportions by Common Name" (earlier in this thread), namely:
• Purples: JN.1.11
• Reds/Pinks: JN.1.11 + FLiRT
• Browns: JN.1.11 + FLiRT-LP
• Blues: XEC
• Greens: JN.1 + FLiRT
• Greys: Other
Reading clockwise from top:
- Multiple unlabeled slivers of grey and pink.
8.6% - KP.3.1.1 / MC [purple]
- Unlabeled purple sliver & grey sliver
2.2% - LB.1.3.1 (1 var) [green]
- Unlabeled green sliver
3.4% - LF.7 (10 variants) [green]
3.9% - LP.8.1.1 (1 var) [brown]
5.9% - LP.8.1 (2 variants) [brown]
- Unlabeled brown and grey silvers
5.2% - MC.1 (5 variants) [purple]
3.4% - MC.8.1 (2 variants) [purple]
4.2% - MC.10.1 (1 var) [purple]
- Two unlabeled purple slices
8.5% - other MC (22 variants) [purple]
- Unlabeled grey slice
1.4% - NL (4 variants) [green]
- Unlabeled grey slice
5.7% - XEC.2 (5 variants) [blue]
2.0% - XEC.4 (1 var) [blue]
34% - other XEC (10 variants) [blue]
1.6% - XEK (4 variants) [red orange]
3.0% - XEQ (1 var) [grey]
- Unlabeled grey slice](https://spaces.hcommons.social/media_attachments/files/113/925/598/461/876/410/original/409a1e8fa79e0fd6.png "Chart: Variants by Pango-Designated Lineage: U.S. Jan 5 to 18
Source: GISAID (via Raj Rajnarayanan's COVID-19 Variant Dashboard, updated Jan 31)
[ beadsland on Ko-fi ]
Pie chart of major lineages, with lesser lineages bundled together by common alphanumeric initial character. Call-outs for each pie slice list number of variants counted and provide a percentage of pie.
Percentage is in a dull grey font, to which a dark backing has been applied to aid legibility.
Color key of pie slices aligns to that of latest \"Estimated Variant Proportions by Common Name\" (earlier in this thread), namely:
• Purples: JN.1.11
• Reds/Pinks: JN.1.11 + FLiRT
• Browns: JN.1.11 + FLiRT-LP
• Blues: XEC
• Greens: JN.1 + FLiRT
• Greys: Other
Reading clockwise from top:
- Multiple unlabeled slivers of grey and pink.
8.6% - KP.3.1.1 / MC [purple]
- Unlabeled purple sliver & grey sliver
2.2% - LB.1.3.1 (1 var) [green]
- Unlabeled green sliver
3.4% - LF.7 (10 variants) [green]
3.9% - LP.8.1.1 (1 var) [brown]
5.9% - LP.8.1 (2 variants) [brown]
- Unlabeled brown and grey silvers
5.2% - MC.1 (5 variants) [purple]
3.4% - MC.8.1 (2 variants) [purple]
4.2% - MC.10.1 (1 var) [purple]
- Two unlabeled purple slices
8.5% - other MC (22 variants) [purple]
- Unlabeled grey slice
1.4% - NL (4 variants) [green]
- Unlabeled grey slice
5.7% - XEC.2 (5 variants) [blue]
2.0% - XEC.4 (1 var) [blue]
34% - other XEC (10 variants) [blue]
1.6% - XEK (4 variants) [red orange]
3.0% - XEQ (1 var) [grey]
- Unlabeled grey slice")
ALT