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Very sparse GISAID data for late October shows FluQE31 KP.3.1.1 / MC and children down to just over half of all sequences.
FLiRT KS.1.1 / FLuQE KP.3.3 hybrid XEC now near one in eight.
JN.1 FLiRT variants LB.1 & LF.*, and FDA's vaccine target KP.2, hang on—yet losing ground.
Per previous analysis, common mutations mean that LB.1 & KP.3 both closer to KP.2 than WHO vaccine target JN.1:
https://disabled.social/@beadsland/112738436725849215
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![Chart: SARSCoV2 Variant Dashboard - USA | 30-DAY TRENDS
Source: NYITCOM Research Report (Raj Rajnarayanan)
Caption (in part): Circulating Variants in…following US States: All - Specimen Collected in…last 30 days | Updated on 11/4/2024 2:53:17 AM [GMT?] | Source (sequences): GISAID
Packed-bubble chart showing tallies of each identified variant for each state, for collection dates 10/13/2024 to 10/25/2024. Top subvariants: KP.3.1.1 (38.37%), XEC (11.84%), KP.2.3 (4.29%), LB.1.3.1 (4.08%).
Raj has standardized bubbles to violet (BA.2.86.*), aqua green (XBB.1.16.*), forest green (XEC, a recombinant of two Pirola strains), and grey (other), although some newer Pango aliases may still be getting unique colors assigned by Tableau.
Bubbles largest and most prominent for KP.3.1.1 for New York (52), New Jersey (25), California (22), Virginia (15), Iowa (14), Pennsylvania (11), Utah (11), Washington. LB.1.3.1 for New York (17). XEC for California (16), New York (13), New Jersey, Iowa, Utah. KP.3.1 of Nevada (15).
Dozens of bubbles of varying sizes representing over sixty distinct variants across various states.
ALT-text by beadsland at ko-fi.](https://spaces.hcommons.social/media_attachments/files/113/451/220/850/768/722/original/d64057528bb86c2a.png "Chart: SARSCoV2 Variant Dashboard - USA | 30-DAY TRENDS
Source: NYITCOM Research Report (Raj Rajnarayanan)
Caption (in part): Circulating Variants in…following US States: All - Specimen Collected in…last 30 days | Updated on 11/4/2024 2:53:17 AM [GMT?] | Source (sequences): GISAID
Packed-bubble chart showing tallies of each identified variant for each state, for collection dates 10/13/2024 to 10/25/2024. Top subvariants: KP.3.1.1 (38.37%), XEC (11.84%), KP.2.3 (4.29%), LB.1.3.1 (4.08%).
Raj has standardized bubbles to violet (BA.2.86.*), aqua green (XBB.1.16.*), forest green (XEC, a recombinant of two Pirola strains), and grey (other), although some newer Pango aliases may still be getting unique colors assigned by Tableau.
Bubbles largest and most prominent for KP.3.1.1 for New York (52), New Jersey (25), California (22), Virginia (15), Iowa (14), Pennsylvania (11), Utah (11), Washington. LB.1.3.1 for New York (17). XEC for California (16), New York (13), New Jersey, Iowa, Utah. KP.3.1 of Nevada (15).
Dozens of bubbles of varying sizes representing over sixty distinct variants across various states.
ALT-text by beadsland at ko-fi.")
ALT
![Chart: Variants by Pango-Designated Lineage: U.S. October 13 to 25
Source: GISAID (via Raj Rajnarayanan's COVID-19 Variant Dashboard, updated November 4)
[ beadsland on Ko-fi ]
Pie chart of major lineages, with lesser lineages bundled together by common alphanumeric initial character. Call-outs for each pie slice list number of variants counted and provide a percentage of pie.
Percentage is in a dull grey font, to which a dark backing has been applied to aid legibility.
Color key of pie slices aligns to that of latest "Estimated Variant Proportions by Common Name" (earlier in this thread), namely:
• Blues: JN.1.11 + FLuQE31-MC
• Greens: JN.1.11 + FLuQE
• Purples: JN.1 + FLiRT-KS
• Reds/Orange: JN.1 + FLiRT
• Browns/Tans: JN.1.11 + FLiRT
• Greys: Other
Reading clockwise from top:
- Unlabeled sliver of orange.
4.5% - JN.1 (6 variants) [grey]
1.2% - KP.1.1.3 / LP [tan]
4.3% - KP.2.3 (1 variant) [brown]
- Unlabeled sliver of brown.
- Unlabeled slice of tan.
38.4% - KP.3.1.1 / MC [blue]
9.4% - KP.3.3 (9 variants) [green]
- Unlabeled sliver of grey.
4.1% - LB.1.3.1 (1 variant) [pink-orange]
3.3% - other LB.1 (9 variants) [purple]
3.1% - LF.7 (1 variant) [orange]
- Unlabeled slivers of orange, tan and grey.
1.4% - MC.1 (1 variant) [blue]
3.7% - MC.10 (1 variant) [blue]
6.5% - other MC (11 variants) [blue]
2.6% - MV, MA, MB & ML [grey]
12.9% - XEC (2 variants) [purple]
- Unlabeled slivers of orange & brown.](https://spaces.hcommons.social/media_attachments/files/113/451/221/981/328/509/original/83a1071032b1d527.png "Chart: Variants by Pango-Designated Lineage: U.S. October 13 to 25
Source: GISAID (via Raj Rajnarayanan's COVID-19 Variant Dashboard, updated November 4)
[ beadsland on Ko-fi ]
Pie chart of major lineages, with lesser lineages bundled together by common alphanumeric initial character. Call-outs for each pie slice list number of variants counted and provide a percentage of pie.
Percentage is in a dull grey font, to which a dark backing has been applied to aid legibility.
Color key of pie slices aligns to that of latest \"Estimated Variant Proportions by Common Name\" (earlier in this thread), namely:
• Blues: JN.1.11 + FLuQE31-MC
• Greens: JN.1.11 + FLuQE
• Purples: JN.1 + FLiRT-KS
• Reds/Orange: JN.1 + FLiRT
• Browns/Tans: JN.1.11 + FLiRT
• Greys: Other
Reading clockwise from top:
- Unlabeled sliver of orange.
4.5% - JN.1 (6 variants) [grey]
1.2% - KP.1.1.3 / LP [tan]
4.3% - KP.2.3 (1 variant) [brown]
- Unlabeled sliver of brown.
- Unlabeled slice of tan.
38.4% - KP.3.1.1 / MC [blue]
9.4% - KP.3.3 (9 variants) [green]
- Unlabeled sliver of grey.
4.1% - LB.1.3.1 (1 variant) [pink-orange]
3.3% - other LB.1 (9 variants) [purple]
3.1% - LF.7 (1 variant) [orange]
- Unlabeled slivers of orange, tan and grey.
1.4% - MC.1 (1 variant) [blue]
3.7% - MC.10 (1 variant) [blue]
6.5% - other MC (11 variants) [blue]
2.6% - MV, MA, MB & ML [grey]
12.9% - XEC (2 variants) [purple]
- Unlabeled slivers of orange & brown.")
ALT